Package: toolStability 0.1.2

toolStability: Tool for Stability Indices Calculation

Tools to calculate stability indices with parametric, non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype. Function "table_stability" offers the summary table of all stability indices in this package. This R package toolStability is part of the main publication: Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>. Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0>. Sample dataset in this package is derived from another publication: Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>. For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>. Indices used in this package are from: Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>. Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>. Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>. Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>. Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>. Lin CS, Binns MR (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>. Nassar R, Hühn M (1987). Pinthus MJ (1973) <doi:10.1007/BF00021563>. Römer T (1917). Shukla GK (1972). Wricke G (1962).

Authors:Tien-Cheng Wang [aut, cre], Tsu-Wei Chen [com]

toolStability_0.1.2.tar.gz
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toolStability.pdf |toolStability.html
toolStability/json (API)
NEWS

# Install 'toolStability' in R:
install.packages('toolStability', repos = c('https://illustratien.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/illustratien/toolstability/issues

Datasets:
  • Data - Wheat APSIM model simulated database

On CRAN:

analysis-packagereproducible-researchstability

4.04 score 1 stars 11 scripts 262 downloads 12 exports 20 dependencies

Last updated 9 months agofrom:0d580347c1. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winNOTENov 08 2024
R-4.5-linuxNOTENov 08 2024
R-4.4-winNOTENov 08 2024
R-4.4-macNOTENov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:adjusted_coefficient_of_variationcoefficient_of_determinationcoefficient_of_regressiondeviation_mean_squaresecovalenceenvironmental_variancegenotypic_stabilitygenotypic_superiority_measuresafety_first_indexstability_variancetable_stabilityvariance_of_rank

Dependencies:clidata.tabledplyrfansigenericsgluelifecyclemagrittrnortestpillarpkgconfigR6rbibutilsRdpackrlangtibbletidyselectutf8vctrswithr

Introduction to toolStability

Rendered fromtoolStability.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-12-01
Started: 2019-08-20

Readme and manuals

Help Manual

Help pageTopics
Adjusted coefficient of variaitonadjusted_coefficient_of_variation
Coefficient of determinationcoefficient_of_determination
Coefficient of regressioncoefficient_of_regression
Wheat APSIM model simulated databaseData
Deviation mean squaresdeviation_mean_squares
Ecovalenceecovalence
Environmental varianceenvironmental_variance
Genotypic stabilitygenotypic_stability
Genotypic superiority measuregenotypic_superiority_measure
Safety-first Indexsafety_first_index
Stability variancestability_variance
Table of stability indicestable_stability
variance of rankvariance_of_rank